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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
DIVE ag35-5 0.793 1.491 0.296 0.358
DIVE seg030 0.793 1.584 0.328 0.337
DIVE seg3 0.798 1.587 0.351 0.341
DIVE ag35 0.804 0.853 0.647 0.438
harris-manor DBS3DMT 0.834 1.348 0.226 0.445
harris-manor DNBS2D3D 0.837 1.331 0.281 0.435
PCH ori_x4 0.839 1.700 0.078 0.398
harris-manor DBS2D3D 0.870 1.350 0.250 0.473
FI-NCA UnetTest 0.950 1.120 0.737 0.486
DIVE unet2 0.972 1.481 0.803 0.419
DIVE unet-2 0.972 1.481 0.803 0.419
DIVE unet4 0.987 1.523 0.775 0.429
DIVE unet-4 0.987 1.523 0.775 0.429
PCH UNet_hw 0.990 1.828 0.529 0.419
DIVE unet3 0.994 1.451 0.831 0.441
DIVE unet-3 0.994 1.451 0.831 0.441
DIVE unet1 1.001 1.436 0.861 0.443
DIVE unet-1 1.001 1.436 0.861 0.443
harris-manor MNBS2D3D 1.079 1.727 0.376 0.555
SCI Submission_1 1.088 1.782 0.556 0.518
harris-manor MBS2D3D 1.133 1.910 0.198 0.610
harris-manor SBS2D3D 1.161 1.980 0.183 0.624
Rhoana Test1 1.162 1.646 1.179 0.486
DIVE ag23 1.221 0.755 1.557 0.647
DIVE focalZ 1.424 0.793 1.925 0.748

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
I2I CSparSep 75.79 71650.0 18918.3 0.140 72.06 79.52
VCG FgSm0808 57.34 75120.7 9109.7 0.107 72.74 41.94
DIVE BouUNet 81.45 75985.0 21974.0 0.160 76.66 86.24
I2I CleftB1 64.97 80004.7 19895.0 0.158 90.98 38.97
DIVE SegCleft 77.03 80978.3 20639.3 0.162 121.03 33.03
DIVE celft_1 77.03 80978.3 20639.3 0.162 121.03 33.03
3DEM BC_BC 66.71 82113.3 13347.3 0.126 79.96 53.46
JRC DTU-1 72.21 85169.0 13607.3 0.131 106.31 38.11
IAL 3d_model 229.78 86415.3 84295.0 0.317 255.27 204.29
DIVE cleft 88.46 97220.7 21239.3 0.172 139.74 37.18
3DEM ABC_BC 62.21 99221.7 10981.0 0.151 75.79 48.63
DIVE Mix_ABC1 74.39 101269.0 16022.0 0.174 79.04 69.73
DIVE clefitlo 151.12 105664.7 32928.0 0.220 190.20 112.05
DIVE MixUNet2 65.19 106260.3 13962.0 0.188 95.28 35.09
CleftKing CleABC3 59.10 106917.7 10746.3 0.165 87.22 30.99
lbdl lb_thicc 59.04 107211.3 234.0 0.190 109.17 8.91
I2I FCEval 66.45 107963.7 21352.3 0.179 82.28 50.62
CleftKing CleABC2 59.47 110518.3 10494.7 0.170 88.88 30.05
3DEM ABC_BC2 61.70 110946.0 10787.3 0.168 76.67 46.73
VCG FgSm0805 54.23 111486.0 4917.0 0.142 84.04 24.43
DIVE CleftC4 65.38 112813.3 14762.3 0.179 82.62 48.15
DIVE CleftC3 66.19 112868.0 18785.0 0.180 82.73 49.65
3DEM Part_A 65.43 112964.7 10645.0 0.174 96.87 34.00
3DEM ABC_BC1 61.72 114005.0 10670.3 0.170 76.99 46.46
DIVE CleftNet 57.73 116095.3 8004.3 0.169 85.60 29.87

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

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Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
NO2 lr_balan 0.447 175.333 314.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
DIVE PTR_V2 0.453 162.667 333.667
IAL PSP_unar 0.461 266.667 281.000
IAL PSP_full 0.464 187.333 310.000
HCBS PrnTrn66 0.465 178.667 322.333
PNI asyn_at0 0.468 293.333 297.000
HCBS Tr66t-01 0.469 182.667 318.667
PNI asyn_at1 0.490 274.333 314.667
PNI asyn_ori 0.493 310.000 302.333
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.