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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
afish1001 wunet_wj 2.212 0.641 5.157 0.854
afish1001 wunet_ce 2.244 0.829 4.982 0.882
afish1001 unet_wj 2.223 0.648 5.178 0.858
afish1001 unet_ce 2.246 0.831 4.987 0.883
DIVE unet4 0.987 1.523 0.775 0.429
VIDAR unet3d 0.534 0.833 0.282 0.256
DIVE unet3 0.994 1.451 0.831 0.441
DIVE unet2 0.972 1.481 0.803 0.419
DIVE unet1 1.001 1.436 0.861 0.443
DIVE unet-4 0.987 1.523 0.775 0.429
DIVE unet-3 0.994 1.451 0.831 0.441
DIVE unet-2 0.972 1.481 0.803 0.419
DIVE unet-1 1.001 1.436 0.861 0.443
- testsubm 2.683 3.083 4.768 0.918
VCG testmala 2.412 3.297 3.283 0.888
IAL spUNetMC 0.317 0.519 0.125 0.156
IAL spUNetHC 0.540 0.755 0.325 0.271
IAL spUNet1 0.504 0.873 0.091 0.266
PCH sff_aug 0.277 0.471 0.118 0.130
PCH sff_a 0.277 0.473 0.119 0.131
DIVE segBW5 0.775 1.112 0.651 0.345
DIVE segBW4 0.772 1.113 0.645 0.344
DIVE segBW3 0.776 1.110 0.653 0.346
DIVE segBW2 0.776 1.111 0.651 0.346
DIVE segBW1 0.693 1.296 0.314 0.304
  • Page 1 of 7
  • 25 of 162 items

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
VCG FgSemi08 55.41 160792.7 3178.3 0.181 96.54 14.28
3DEM Part_A 65.43 112964.7 10645.0 0.174 96.87 34.00
CMM UNet50 69.31 65762.0 12634.7 0.139 97.45 41.17
SDG Unet2 63.92 202177.7 13156.0 0.256 97.64 30.19
HSS HSZ 90.11 65092.3 25807.3 0.154 99.61 80.61
DIVE cleftloh 194.25 22502.0 67513.7 0.236 102.22 286.27
JRC DTU-1 72.21 85169.0 13607.3 0.131 106.31 38.11
VCG FgSemi05 57.63 221731.7 975.7 0.232 107.73 7.52
lbdl lb_thicc 59.04 107211.3 234.0 0.190 109.17 8.91
DIVE BesUNet 82.46 131090.7 15589.0 0.206 109.52 55.40
JRC DTU-2 67.56 70761.3 10069.3 0.123 109.67 25.46
DIVE CRNNGate 120.36 62609.0 47395.7 0.175 110.06 130.66
DIVE exp19lst 90.80 25114.7 21554.0 0.107 117.39 64.21
DIVE SegCleft 77.03 80978.3 20639.3 0.162 121.03 33.03
DIVE celft_1 77.03 80978.3 20639.3 0.162 121.03 33.03
lbdl lb_lst 64.22 118160.0 0.0 0.209 121.50 6.93
3DEM All_A 76.12 157692.7 6808.7 0.256 130.59 21.66
DIVE cleft 88.46 97220.7 21239.3 0.172 139.74 37.18
Kreshuk MG 152.52 129494.3 63958.0 0.278 157.83 147.21
IAL full_mod 137.73 153335.3 61967.7 0.310 176.37 99.09
lbdl Cleft_lb 97.85 227868.0 0.0 0.262 181.08 14.61
SDG Synap0.0 118.10 193580.0 12504.0 0.270 185.62 50.58
SDG SynapX.0 118.10 193580.0 12504.0 0.270 185.62 50.58
DIVE clefitlo 151.12 105664.7 32928.0 0.220 190.20 112.05
SDG SynapX.X 121.40 204301.0 16302.7 0.286 194.74 48.06

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
NO2 lr_balan 0.447 175.333 314.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
DIVE PTR_V2 0.453 162.667 333.667
IAL PSP_unar 0.461 266.667 281.000
IAL PSP_full 0.464 187.333 310.000
HCBS PrnTrn66 0.465 178.667 322.333
PNI asyn_at0 0.468 293.333 297.000
HCBS Tr66t-01 0.469 182.667 318.667
PNI asyn_at1 0.490 274.333 314.667
PNI asyn_ori 0.493 310.000 302.333
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.