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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
JRC MALAMCv3 0.300 0.584 0.062 0.140
IAL HCAvgSP 0.262 0.448 0.063 0.135
IAL HCCAvgSP 0.257 0.438 0.063 0.132
PNI RS-UNet1 0.258 0.435 0.076 0.130
PCH ori_x4 0.839 1.700 0.078 0.398
PNI JRC-UNet 0.239 0.386 0.081 0.123
IAL HCAvgPx 0.224 0.364 0.083 0.114
IAL HCCAvgPx 0.224 0.361 0.085 0.113
JRC MALAMCv2 0.276 0.490 0.089 0.132
IAL spUNet1 0.504 0.873 0.091 0.266
PNI RS-UNet0 0.248 0.376 0.092 0.134
IAL AvgAggLR 0.244 0.372 0.096 0.130
IAL GASP_avg 0.241 0.365 0.096 0.129
IAL MWS 0.392 0.718 0.100 0.187
PNI PNIUNet0 0.229 0.350 0.101 0.117
PNI PNIUNet5 0.228 0.345 0.106 0.116
PNI PNIUNet7 0.228 0.345 0.106 0.116
IAL CMskMWS2 0.246 0.383 0.107 0.125
PNI PNIUNet4 0.237 0.350 0.110 0.122
PCH UNet_mis 0.272 0.453 0.113 0.131
PCH interp_a 0.274 0.472 0.113 0.129
PCH interp 0.275 0.473 0.114 0.129
PNI PNIUNet6 0.237 0.349 0.114 0.122
PNI PNIUNet8 0.237 0.349 0.114 0.122
IAL UnetLMC2 0.221 0.339 0.115 0.108
  • Page 1 of 7
  • 25 of 162 items

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
DIVE ex19t5 315.97 64192.0 1757.3 0.112 600.79 31.15
DIVE CRunet2 318.85 107459361.0 4195.7 0.824 611.30 26.40
DIVE Rclefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE OrClefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE ResUnet 380.86 167900713.3 0.0 0.990 761.72 0.00
DKFZ-MIC nnUNet 74.96 49914.0 18981.3 0.117 64.46 85.46
DLST DLST001 71.19 53908.0 14839.0 0.106 69.02 73.36
DLST DLST002 75.46 56645.7 17498.3 0.119 65.93 85.00
DLST DLST003 91.71 33118.7 35934.7 0.125 58.14 125.27
HSS 3DUNet 65.34 43440.3 22443.3 0.106 63.26 67.43
HSS 3DUNet04 79.33 29732.0 27514.3 0.113 53.22 105.44
HSS HSZ 90.11 65092.3 25807.3 0.154 99.61 80.61
I2I CleftB1 64.97 80004.7 19895.0 0.158 90.98 38.97
I2I FCEval 66.45 107963.7 21352.3 0.179 82.28 50.62
I2I SparSep 66.76 151781.7 11350.3 0.188 87.35 46.17
I2I CleftB 74.31 65334.0 21669.0 0.142 92.36 56.26
I2I CSparSep 75.79 71650.0 18918.3 0.140 72.06 79.52
IAL full_mod 137.73 153335.3 61967.7 0.310 176.37 99.09
IAL unaries 150.64 175624.3 60151.3 0.327 213.52 87.77
IAL A+test 153.91 196558.0 55962.3 0.339 232.28 75.53
IAL 3d_model 229.78 86415.3 84295.0 0.317 255.27 204.29
JRC DTU-2 67.56 70761.3 10069.3 0.123 109.67 25.46
JRC DTU-1 72.21 85169.0 13607.3 0.131 106.31 38.11
Kreshuk MG 152.52 129494.3 63958.0 0.278 157.83 147.21
SDG Unet2 63.92 202177.7 13156.0 0.256 97.64 30.19

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
NO2 lr_balan 0.447 175.333 314.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
DIVE PTR_V2 0.453 162.667 333.667
IAL PSP_unar 0.461 266.667 281.000
IAL PSP_full 0.464 187.333 310.000
HCBS PrnTrn66 0.465 178.667 322.333
PNI asyn_at0 0.468 293.333 297.000
HCBS Tr66t-01 0.469 182.667 318.667
PNI asyn_at1 0.490 274.333 314.667
PNI asyn_ori 0.493 310.000 302.333
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.