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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
afish1001 wunet_wj 2.212 0.641 5.157 0.854
afish1001 wunet_ce 2.244 0.829 4.982 0.882
afish1001 unet_wj 2.223 0.648 5.178 0.858
afish1001 unet_ce 2.246 0.831 4.987 0.883
DIVE unet4 0.987 1.523 0.775 0.429
VIDAR unet3d 0.534 0.833 0.282 0.256
DIVE unet3 0.994 1.451 0.831 0.441
DIVE unet2 0.972 1.481 0.803 0.419
DIVE unet1 1.001 1.436 0.861 0.443
DIVE unet-4 0.987 1.523 0.775 0.429
DIVE unet-3 0.994 1.451 0.831 0.441
DIVE unet-2 0.972 1.481 0.803 0.419
DIVE unet-1 1.001 1.436 0.861 0.443
- testsubm 2.683 3.083 4.768 0.918
VCG testmala 2.412 3.297 3.283 0.888
IAL spUNetMC 0.317 0.519 0.125 0.156
IAL spUNetHC 0.540 0.755 0.325 0.271
IAL spUNet1 0.504 0.873 0.091 0.266
PCH sff_aug 0.277 0.471 0.118 0.130
PCH sff_a 0.277 0.473 0.119 0.131
DIVE segBW5 0.775 1.112 0.651 0.345
DIVE segBW4 0.772 1.113 0.645 0.344
DIVE segBW3 0.776 1.110 0.653 0.346
DIVE segBW2 0.776 1.111 0.651 0.346
DIVE segBW1 0.693 1.296 0.314 0.304
  • Page 1 of 7
  • 25 of 162 items

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
I2I CleftB 74.31 65334.0 21669.0 0.142 92.36 56.26
DIVE BouUNet 81.45 75985.0 21974.0 0.160 76.66 86.24
HSS 3DUNet 65.34 43440.3 22443.3 0.106 63.26 67.43
DIVE CRunet22 180.77 162763.0 23055.7 0.312 305.59 55.95
DIVE WeitUNet 78.12 54372.7 24480.3 0.128 71.51 84.73
HSS HSZ 90.11 65092.3 25807.3 0.154 99.61 80.61
HSS 3DUNet04 79.33 29732.0 27514.3 0.113 53.22 105.44
DIVE clefitlo 151.12 105664.7 32928.0 0.220 190.20 112.05
DLST DLST003 91.71 33118.7 35934.7 0.125 58.14 125.27
CMM Max Test 74.10 24019.3 44179.7 0.101 64.63 83.56
DIVE CRNNGate 120.36 62609.0 47395.7 0.175 110.06 130.66
DIVE cleft_hi 107.24 44844.3 52063.7 0.158 94.14 120.33
IAL A+test 153.91 196558.0 55962.3 0.339 232.28 75.53
IAL unaries 150.64 175624.3 60151.3 0.327 213.52 87.77
IAL full_mod 137.73 153335.3 61967.7 0.310 176.37 99.09
Kreshuk MG 152.52 129494.3 63958.0 0.278 157.83 147.21
DIVE cleftloh 194.25 22502.0 67513.7 0.236 102.22 286.27
IAL 3d_model 229.78 86415.3 84295.0 0.317 255.27 204.29
VCG FgDT05 124.93 15650.7 88933.3 0.165 41.04 208.83
3DEM ABC_C 375.91 289364.7 89797.7 0.619 385.49 366.34
SDG Unet0 171.88 33308.3 108288.7 0.262 91.45 252.31
cxj USTC 284.98 1015564.7 108523.3 0.600 516.31 53.65
VCG FgDTSm05 232.99 15377.7 173608.0 0.349 56.70 409.27
VCG FgDTSm08 434.91 4747.0 355265.0 0.619 42.86 826.96
3DEM BesA275 252.56 254701.0 581781.3 0.456 199.02 306.10

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
IAL PSP_unar 0.461 266.667 281.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
PNI asyn_at0 0.468 293.333 297.000
PNI asyn_ori 0.493 310.000 302.333
IAL PSP_full 0.464 187.333 310.000
NO2 lr_balan 0.447 175.333 314.000
PNI asyn_at1 0.490 274.333 314.667
HCBS Tr66t-01 0.469 182.667 318.667
HCBS PrnTrn66 0.465 178.667 322.333
DIVE PTR_V2 0.453 162.667 333.667
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.