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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
DIVE seg&BW3 0.714 1.343 0.322 0.312
DIVE segBC018 0.717 1.347 0.422 0.296
DIVE seg8 0.717 1.388 0.239 0.325
DIVE seg7 0.717 1.398 0.232 0.324
DIVE SegClef1 0.723 1.365 0.425 0.298
DIVE pi-net 0.728 1.480 0.270 0.305
DIVE seg5 0.730 1.423 0.243 0.328
DIVE seg2 0.735 1.438 0.239 0.330
DIVE seg1 0.745 1.461 0.242 0.333
DIVE CRunet22 0.746 1.522 0.438 0.298
DIVE newSeg 0.752 1.471 0.252 0.335
DIVE ag35-4 0.759 0.899 0.510 0.416
DIVE M2uD_CSR 0.766 1.030 0.770 0.329
DIVE segBW4 0.772 1.113 0.645 0.344
DIVE seg0316 0.775 1.536 0.327 0.331
DIVE segBW5 0.775 1.112 0.651 0.345
DIVE segBW2 0.776 1.111 0.651 0.346
DIVE segBW3 0.776 1.110 0.653 0.346
DIVE ag35-3 0.784 0.829 0.612 0.433
DIVE seg018 0.787 1.567 0.325 0.336
DIVE seg4 0.791 1.565 0.347 0.340
DIVE ag35-5 0.793 1.491 0.296 0.358
DIVE seg030 0.793 1.584 0.328 0.337
DIVE seg3 0.798 1.587 0.351 0.341
DIVE ag35 0.804 0.853 0.647 0.438

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
DIVE Rclefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE OrClefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE ResUnet 380.86 167900713.3 0.0 0.990 761.72 0.00
CMM GenT 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE CRunet2 318.85 107459361.0 4195.7 0.824 611.30 26.40
VCG FgRj0805 117.25 1329995.3 327.7 0.610 232.66 1.84
VCG FgRj0808 117.25 1329995.3 327.7 0.610 232.66 1.84
cxj USTC 284.98 1015564.7 108523.3 0.600 516.31 53.65
DIVE cleftlol 179.28 723352.7 2716.7 0.375 334.05 24.51
DIVE exp18_la 284.83 684532.0 0.0 0.493 564.72 4.94
DIVE SegClef1 156.70 617804.0 3339.3 0.373 296.85 16.56
DIVE cleft_A+ 199.35 378215.7 0.0 0.386 395.99 2.72
DIVE Exp12_64 202.46 335698.7 0.0 0.374 402.99 1.93
3DEM ABC_C 375.91 289364.7 89797.7 0.619 385.49 366.34
DIVE cleft_lb 139.19 284326.0 0.0 0.349 265.87 12.52
DIVE 3class8t 198.78 262876.7 0.0 0.282 393.81 3.76
3DEM BesA275 252.56 254701.0 581781.3 0.456 199.02 306.10
lbdl Cleft_lb 97.85 227868.0 0.0 0.262 181.08 14.61
VCG FgSemi05 57.63 221731.7 975.7 0.232 107.73 7.52
SDG PyTC20-P 64.59 215905.3 4962.0 0.227 96.14 33.05
SDG SynapX.X 121.40 204301.0 16302.7 0.286 194.74 48.06
SDG Unet2 63.92 202177.7 13156.0 0.256 97.64 30.19
IAL A+test 153.91 196558.0 55962.3 0.339 232.28 75.53
SDG Synap0.0 118.10 193580.0 12504.0 0.270 185.62 50.58
SDG SynapX.0 118.10 193580.0 12504.0 0.270 185.62 50.58
  • Page 1 of 5
  • 25 of 101 items

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
IAL PSP_unar 0.461 266.667 281.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
PNI asyn_at0 0.468 293.333 297.000
PNI asyn_ori 0.493 310.000 302.333
IAL PSP_full 0.464 187.333 310.000
NO2 lr_balan 0.447 175.333 314.000
PNI asyn_at1 0.490 274.333 314.667
HCBS Tr66t-01 0.469 182.667 318.667
HCBS PrnTrn66 0.465 178.667 322.333
DIVE PTR_V2 0.453 162.667 333.667
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.