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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

Change the view to:
Group Submission CREMI score VOI split VOI merge ARAND
DIVE DISW 0.557 1.035 0.149 0.265
DIVE M2uD_CSR 0.766 1.030 0.770 0.329
DIVE focalMST 0.603 1.027 0.244 0.289
DIVE ag35-42 0.553 0.999 0.150 0.267
IIL+DIVE@TAMU new_segm 2.671 0.928 6.475 0.964
FI-NCA SwTr 0.602 0.919 0.321 0.294
DIVE ag35-2 0.702 0.917 0.402 0.384
DIVE MSTW 0.537 0.915 0.168 0.268
DIVE ag35-4 0.759 0.899 0.510 0.416
SeungLab-eding Seung-ed 1.525 0.895 2.160 0.764
IAL spUNet1 0.504 0.873 0.091 0.266
DIVE ag35 0.804 0.853 0.647 0.438
VIDAR unet3d 0.534 0.833 0.282 0.256
afish1001 unet_ce 2.246 0.831 4.987 0.883
afish1001 wunet_ce 2.244 0.829 4.982 0.882
DIVE ag35-3 0.784 0.829 0.612 0.433
DIVE focalZ 1.424 0.793 1.925 0.748
FI-NCA UnetMF 0.608 0.772 0.534 0.283
DIVE ag23 1.221 0.755 1.557 0.647
IAL spUNetHC 0.540 0.755 0.325 0.271
VIDAR mala_py3 0.543 0.724 0.374 0.270
IAL MWS 0.392 0.718 0.100 0.187
afish1001 OurUnet 2.197 0.698 5.034 0.855
afish1001 ABWUnet 2.199 0.696 5.042 0.856
IAL LMC V6 0.516 0.672 0.415 0.245

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
DIVE Rclefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE OrClefts 380.86 167900713.3 0.0 0.990 761.72 0.00
DIVE ResUnet 380.86 167900713.3 0.0 0.990 761.72 0.00
CMM GenT 380.86 167900713.3 0.0 0.990 761.72 0.00
VCG FgRj0805 117.25 1329995.3 327.7 0.610 232.66 1.84
VCG FgRj0808 117.25 1329995.3 327.7 0.610 232.66 1.84
DIVE Exp12_64 202.46 335698.7 0.0 0.374 402.99 1.93
DIVE cleft_A+ 199.35 378215.7 0.0 0.386 395.99 2.72
DIVE 3class8t 198.78 262876.7 0.0 0.282 393.81 3.76
DIVE exp18_la 284.83 684532.0 0.0 0.493 564.72 4.94
lbdl lb_lst 64.22 118160.0 0.0 0.209 121.50 6.93
VCG FgSemi05 57.63 221731.7 975.7 0.232 107.73 7.52
lbdl lb_thicc 59.04 107211.3 234.0 0.190 109.17 8.91
DIVE cleft_lb 139.19 284326.0 0.0 0.349 265.87 12.52
VCG FgSemi08 55.41 160792.7 3178.3 0.181 96.54 14.28
lbdl Cleft_lb 97.85 227868.0 0.0 0.262 181.08 14.61
DIVE ex19t2 283.68 173078.7 0.0 0.201 551.77 15.60
DIVE SegClef1 156.70 617804.0 3339.3 0.373 296.85 16.56
3DEM All_A 76.12 157692.7 6808.7 0.256 130.59 21.66
VCG FgSm0805 54.23 111486.0 4917.0 0.142 84.04 24.43
DIVE cleftlol 179.28 723352.7 2716.7 0.375 334.05 24.51
VCG FgUPlus 57.90 137412.7 4763.3 0.160 90.99 24.81
JRC DTU-2 67.56 70761.3 10069.3 0.123 109.67 25.46
DIVE exp18_be 136.63 8797.3 0.0 0.014 247.19 26.08
DIVE CRunet2 318.85 107459361.0 4195.7 0.824 611.30 26.40
  • Page 1 of 5
  • 25 of 102 items

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN
PNI asyn_mod 0.423 367.667 262.333
NO2 lr_balan 0.447 175.333 314.000
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
DIVE PTR_V2 0.453 162.667 333.667
IAL PSP_unar 0.461 266.667 281.000
IAL PSP_full 0.464 187.333 310.000
HCBS PrnTrn66 0.465 178.667 322.333
PNI asyn_at0 0.468 293.333 297.000
HCBS Tr66t-01 0.469 182.667 318.667
PNI asyn_at1 0.490 274.333 314.667
PNI asyn_ori 0.493 310.000 302.333
NO2 lr_affin 0.567 118.333 450.000
AnonumoysGroup PrTrn66 0.620 238.000 451.667
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.