CREMI

Results for the neuron segmentation category, averaged over all samples.

Group	Submission	CREMI score	VOI split	VOI merge	ARAND
afish1001	OurUnet	2.197	0.698	5.034	0.855
afish1001	ABWUnet	2.199	0.696	5.042	0.856
afish1001	wunet_wj	2.212	0.641	5.157	0.854
afish1001	unet_wj	2.223	0.648	5.178	0.858
afish1001	wunet_ce	2.244	0.829	4.982	0.882
afish1001	unet_ce	2.246	0.831	4.987	0.883
VIDAR	MALAv2	0.286	0.479	0.127	0.135
VIDAR	unet3d	0.534	0.833	0.282	0.256
VIDAR	mala_py3	0.543	0.724	0.374	0.270
VIDAR	mala_py2	0.675	1.365	0.174	0.300
VIDAR	mala_py	0.696	1.446	0.153	0.307
VCG	mala-seg	0.349	0.452	0.245	0.179
VCG	LFC	0.616	1.085	0.140	0.313
VCG	LearnC	0.618	1.093	0.139	0.313
VCG	LearnCt2	0.623	1.091	0.148	0.316
VCG	testmala	2.412	3.297	3.283	0.888
VCG	ZWZ-0.0	2.675	3.524	4.193	0.927
SeungLab-eding	Seung-ed	1.525	0.895	2.160	0.764
SCI	Submission_1	1.088	1.782	0.556	0.518
Rhoana	Test1	1.162	1.646	1.179	0.486
PNI	PNIUNet5	0.228	0.345	0.106	0.116
PNI	PNIUNet7	0.228	0.345	0.106	0.116
PNI	PNIUNet0	0.229	0.350	0.101	0.117
PNI	PNIUNet4	0.237	0.350	0.110	0.122
PNI	PNIUNet6	0.237	0.349	0.114	0.122

CREMI score: The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge: The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND: The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Results for the synaptic cleft detection category, averaged over all samples.

Group	Submission	CREMI score	FP	FN	1 - F-score	ADGT	ADF
3DEM	BesA225	59.34	120053.7	7534.0	0.177	90.88	27.80
3DEM	BesA0.20	60.04	121311.3	7529.0	0.182	92.91	27.17
3DEM	ABC_BC2	61.70	110946.0	10787.3	0.168	76.67	46.73
3DEM	ABC_BC1	61.72	114005.0	10670.3	0.170	76.99	46.46
3DEM	ABC_BC	62.21	99221.7	10981.0	0.151	75.79	48.63
3DEM	Part_A	65.43	112964.7	10645.0	0.174	96.87	34.00
3DEM	BC_BC	66.71	82113.3	13347.3	0.126	79.96	53.46
3DEM	All_A	76.12	157692.7	6808.7	0.256	130.59	21.66
3DEM	BesA275	252.56	254701.0	581781.3	0.456	199.02	306.10
3DEM	ABC_C	375.91	289364.7	89797.7	0.619	385.49	366.34
CMM	UNet50	69.31	65762.0	12634.7	0.139	97.45	41.17
CMM	Max Test	74.10	24019.3	44179.7	0.101	64.63	83.56
CMM	GenT	380.86	167900713.3	0.0	0.990	761.72	0.00
CleftKing	CleABC1	58.02	130521.0	7637.3	0.179	87.11	28.94
CleftKing	CleABC3	59.10	106917.7	10746.3	0.165	87.22	30.99
CleftKing	CleABC2	59.47	110518.3	10494.7	0.170	88.88	30.05
DIVE	CleftNet	57.73	116095.3	8004.3	0.169	85.60	29.87
DIVE	Aug-UNet	57.89	123985.7	7992.0	0.177	86.45	29.32
DIVE	MixUNet	57.91	125220.0	7920.0	0.178	86.57	29.25
DIVE	MixUNet4	59.03	122122.0	7761.3	0.177	89.35	28.71
DIVE	MixUNet3	59.11	125333.0	7696.0	0.180	89.68	28.54
DIVE	MixUNet2	65.19	106260.3	13962.0	0.188	95.28	35.09
DIVE	CleftC4	65.38	112813.3	14762.3	0.179	82.62	48.15
DIVE	CleftC5	65.75	125395.7	11906.7	0.181	84.10	47.41
DIVE	CleftC2	66.19	117135.0	19904.7	0.181	83.30	49.08

CREMI score: The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score: The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT: The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF: The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Results for the synaptic partner identification category, averaged over all samples.

Group	Submission	CREMI score	FP	FN
AnonumoysGroup	PrTrn66	0.620	238.000	451.667
NO2	lr_affin	0.567	118.333	450.000
DIVE	PTR_V2	0.453	162.667	333.667
HCBS	PrnTrn66	0.465	178.667	322.333
HCBS	Tr66t-01	0.469	182.667	318.667
PNI	asyn_at1	0.490	274.333	314.667
NO2	lr_balan	0.447	175.333	314.000
IAL	PSP_full	0.464	187.333	310.000
PNI	asyn_ori	0.493	310.000	302.333
PNI	asyn_at0	0.468	293.333	297.000
HCBS	Tr66comb	0.451	219.000	292.333
HCBS	Tr66_80K	0.449	223.000	286.667
IAL	PSP_unar	0.461	266.667	281.000
PNI	asyn_mod	0.423	367.667	262.333

CREMI score: 1 - F-Score of the FP and FN.
FP, FN: The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.

MICCAI Challenge on Circuit Reconstruction from Electron Microscopy Images