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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

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Group Submission CREMI score VOI split VOI merge ARAND
IAL UnetLMC2 0.221 0.339 0.115 0.108
IAL HCCAvgPx 0.224 0.361 0.085 0.113
IAL HCAvgPx 0.224 0.364 0.083 0.114
PNI PNIUNet5 0.228 0.345 0.106 0.116
PNI PNIUNet7 0.228 0.345 0.106 0.116
PNI PNIUNet0 0.229 0.350 0.101 0.117
PNI PNIUNet4 0.237 0.350 0.110 0.122
PNI PNIUNet6 0.237 0.349 0.114 0.122
PNI PNIUNet8 0.237 0.349 0.114 0.122
PNI JRC-UNet 0.239 0.386 0.081 0.123
PNI PNIUNet3 0.240 0.327 0.124 0.128
IAL GASP_avg 0.241 0.365 0.096 0.129
IAL UnetLRIF 0.242 0.350 0.135 0.121
PNI PNIUNet2 0.242 0.326 0.127 0.130
IAL AvgAggLR 0.244 0.372 0.096 0.130
PNI RS-UNet2 0.246 0.318 0.158 0.127
IAL CMskMWS2 0.246 0.383 0.107 0.125
PNI RS-UNet0 0.248 0.376 0.092 0.134
IAL DunetLR 0.249 0.372 0.142 0.121
PNI PNIUNet1 0.251 0.344 0.129 0.134
IAL HCCAvgSP 0.257 0.438 0.063 0.132
PNI RS-UNet1 0.258 0.435 0.076 0.130
IAL HCAvgSP 0.262 0.448 0.063 0.135
JRC MTLSD 0.266 0.380 0.116 0.144
IAL pEmbUNet 0.268 0.397 0.127 0.139
  • Page 1 of 7
  • 25 of 162 items

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

Change the view to:
Group Submission CREMI score FP FN 1 - F-score ADGT ADF
3DEM BesA225 59.34 120053.7 7534.0 0.177 90.88 27.80
3DEM BesA0.20 60.04 121311.3 7529.0 0.182 92.91 27.17
3DEM ABC_BC2 61.70 110946.0 10787.3 0.168 76.67 46.73
3DEM ABC_BC1 61.72 114005.0 10670.3 0.170 76.99 46.46
3DEM ABC_BC 62.21 99221.7 10981.0 0.151 75.79 48.63
3DEM Part_A 65.43 112964.7 10645.0 0.174 96.87 34.00
3DEM BC_BC 66.71 82113.3 13347.3 0.126 79.96 53.46
3DEM All_A 76.12 157692.7 6808.7 0.256 130.59 21.66
3DEM BesA275 252.56 254701.0 581781.3 0.456 199.02 306.10
3DEM ABC_C 375.91 289364.7 89797.7 0.619 385.49 366.34
CMM UNet50 69.31 65762.0 12634.7 0.139 97.45 41.17
CMM Max Test 74.10 24019.3 44179.7 0.101 64.63 83.56
CMM GenT 380.86 167900713.3 0.0 0.990 761.72 0.00
CleftKing CleABC1 58.02 130521.0 7637.3 0.179 87.11 28.94
CleftKing CleABC3 59.10 106917.7 10746.3 0.165 87.22 30.99
CleftKing CleABC2 59.47 110518.3 10494.7 0.170 88.88 30.05
DIVE CleftNet 57.73 116095.3 8004.3 0.169 85.60 29.87
DIVE Aug-UNet 57.89 123985.7 7992.0 0.177 86.45 29.32
DIVE MixUNet 57.91 125220.0 7920.0 0.178 86.57 29.25
DIVE MixUNet4 59.03 122122.0 7761.3 0.177 89.35 28.71
DIVE MixUNet3 59.11 125333.0 7696.0 0.180 89.68 28.54
DIVE MixUNet2 65.19 106260.3 13962.0 0.188 95.28 35.09
DIVE CleftC4 65.38 112813.3 14762.3 0.179 82.62 48.15
DIVE CleftC5 65.75 125395.7 11906.7 0.181 84.10 47.41
DIVE CleftC2 66.19 117135.0 19904.7 0.181 83.30 49.08
  • Page 1 of 5
  • 25 of 101 items

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

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Group Submission CREMI score FP FN
AnonumoysGroup PrTrn66 0.620 238.000 451.667
NO2 lr_affin 0.567 118.333 450.000
PNI asyn_ori 0.493 310.000 302.333
PNI asyn_at1 0.490 274.333 314.667
HCBS Tr66t-01 0.469 182.667 318.667
PNI asyn_at0 0.468 293.333 297.000
HCBS PrnTrn66 0.465 178.667 322.333
IAL PSP_full 0.464 187.333 310.000
IAL PSP_unar 0.461 266.667 281.000
DIVE PTR_V2 0.453 162.667 333.667
HCBS Tr66comb 0.451 219.000 292.333
HCBS Tr66_80K 0.449 223.000 286.667
NO2 lr_balan 0.447 175.333 314.000
PNI asyn_mod 0.423 367.667 262.333
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.