CREMI

Results for the neuron segmentation category, averaged over all samples.

Group	Submission	CREMI score	VOI split	VOI merge	ARAND
FI-NCA	UnetMF	0.608	0.772	0.534	0.283
DIVE	focalZ	1.424	0.793	1.925	0.748
DIVE	ag35-3	0.784	0.829	0.612	0.433
afish1001	wunet_ce	2.244	0.829	4.982	0.882
afish1001	unet_ce	2.246	0.831	4.987	0.883
VIDAR	unet3d	0.534	0.833	0.282	0.256
DIVE	ag35	0.804	0.853	0.647	0.438
IAL	spUNet1	0.504	0.873	0.091	0.266
SeungLab-eding	Seung-ed	1.525	0.895	2.160	0.764
DIVE	ag35-4	0.759	0.899	0.510	0.416
DIVE	MSTW	0.537	0.915	0.168	0.268
DIVE	ag35-2	0.702	0.917	0.402	0.384
FI-NCA	SwTr	0.602	0.919	0.321	0.294
IIL+DIVE@TAMU	new_segm	2.671	0.928	6.475	0.964
DIVE	ag35-42	0.553	0.999	0.150	0.267
DIVE	focalMST	0.603	1.027	0.244	0.289
DIVE	M2uD_CSR	0.766	1.030	0.770	0.329
DIVE	DISW	0.557	1.035	0.149	0.265
DIVE	MPfcn	0.625	1.063	0.486	0.260
DIVE	CRunet2	0.566	1.081	0.389	0.229
VCG	LFC	0.616	1.085	0.140	0.313
VCG	LearnCt2	0.623	1.091	0.148	0.316
VCG	LearnC	0.618	1.093	0.139	0.313
DIVE	segBW3	0.776	1.110	0.653	0.346
DIVE	segBW2	0.776	1.111	0.651	0.346

CREMI score: The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge: The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND: The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Results for the synaptic cleft detection category, averaged over all samples.

Group	Submission	CREMI score	FP	FN	1 - F-score	ADGT	ADF
VCG	FgSm0805	54.23	111486.0	4917.0	0.142	84.04	24.43
VCG	FgSemi08	55.41	160792.7	3178.3	0.181	96.54	14.28
VCG	FgSm0808	57.34	75120.7	9109.7	0.107	72.74	41.94
VCG	FgSemi05	57.63	221731.7	975.7	0.232	107.73	7.52
DIVE	CleftNet	57.73	116095.3	8004.3	0.169	85.60	29.87
DIVE	Aug-UNet	57.89	123985.7	7992.0	0.177	86.45	29.32
VCG	FgUPlus	57.90	137412.7	4763.3	0.160	90.99	24.81
DIVE	MixUNet	57.91	125220.0	7920.0	0.178	86.57	29.25
CleftKing	CleABC1	58.02	130521.0	7637.3	0.179	87.11	28.94
VCG	FgUPlus8	58.66	65345.7	11887.0	0.101	70.36	46.96
DIVE	MixUNet4	59.03	122122.0	7761.3	0.177	89.35	28.71
lbdl	lb_thicc	59.04	107211.3	234.0	0.190	109.17	8.91
CleftKing	CleABC3	59.10	106917.7	10746.3	0.165	87.22	30.99
DIVE	MixUNet3	59.11	125333.0	7696.0	0.180	89.68	28.54
3DEM	BesA225	59.34	120053.7	7534.0	0.177	90.88	27.80
CleftKing	CleABC2	59.47	110518.3	10494.7	0.170	88.88	30.05
3DEM	BesA0.20	60.04	121311.3	7529.0	0.182	92.91	27.17
3DEM	ABC_BC2	61.70	110946.0	10787.3	0.168	76.67	46.73
3DEM	ABC_BC1	61.72	114005.0	10670.3	0.170	76.99	46.46
3DEM	ABC_BC	62.21	99221.7	10981.0	0.151	75.79	48.63
SDG	Unet2	63.92	202177.7	13156.0	0.256	97.64	30.19
lbdl	lb_lst	64.22	118160.0	0.0	0.209	121.50	6.93
SDG	PyTC20-P	64.59	215905.3	4962.0	0.227	96.14	33.05
I2I	CleftB1	64.97	80004.7	19895.0	0.158	90.98	38.97
DIVE	MixUNet2	65.19	106260.3	13962.0	0.188	95.28	35.09

CREMI score: The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score: The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT: The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF: The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Results for the synaptic partner identification category, averaged over all samples.

Group	Submission	CREMI score	FP	FN
PNI	asyn_mod	0.423	367.667	262.333
IAL	PSP_unar	0.461	266.667	281.000
HCBS	Tr66_80K	0.449	223.000	286.667
HCBS	Tr66comb	0.451	219.000	292.333
PNI	asyn_at0	0.468	293.333	297.000
PNI	asyn_ori	0.493	310.000	302.333
IAL	PSP_full	0.464	187.333	310.000
NO2	lr_balan	0.447	175.333	314.000
PNI	asyn_at1	0.490	274.333	314.667
HCBS	Tr66t-01	0.469	182.667	318.667
HCBS	PrnTrn66	0.465	178.667	322.333
DIVE	PTR_V2	0.453	162.667	333.667
NO2	lr_affin	0.567	118.333	450.000
AnonumoysGroup	PrTrn66	0.620	238.000	451.667

CREMI score: 1 - F-Score of the FP and FN.
FP, FN: The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.

MICCAI Challenge on Circuit Reconstruction from Electron Microscopy Images