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CREMI

MICCAI Challenge on
Circuit Reconstruction from Electron Microscopy Images

Leaderboard Neuron Segmentation

Results for the neuron segmentation category, averaged over all samples.

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Group Submission CREMI score VOI split VOI merge ARAND
afish1001 ABWUnet 2.199 0.696 5.042 0.856
IAL AvgAggLR 0.244 0.372 0.096 0.130
DIVE BasUnet 2.959 1.740 7.366 0.962
IAL CMaskMC 0.305 0.341 0.175 0.184
IAL CMaskMC2 0.276 0.348 0.152 0.157
IAL CMaskMWS 0.314 0.361 0.162 0.196
IAL CMaskSP1 0.317 0.360 0.186 0.187
IAL CMaskSP2 0.327 0.339 0.205 0.201
IAL CMaskSP3 0.378 0.349 0.323 0.220
IAL CMaskSP4 0.280 0.371 0.159 0.149
IAL CMskMWS2 0.246 0.383 0.107 0.125
DIVE CRNNGate 0.514 1.191 0.196 0.194
DIVE CRunet1 0.619 1.141 0.381 0.275
DIVE CRunet2 0.566 1.081 0.389 0.229
DIVE CRunet22 0.746 1.522 0.438 0.298
DIVE DISW 0.557 1.035 0.149 0.265
HVCL Deep Res 2.212 1.672 4.182 0.837
IAL DunetLR 0.249 0.372 0.142 0.121
- Final 2.896 3.805 5.599 0.895
IAL GASP_avg 0.241 0.365 0.096 0.129
IAL HCAvgPx 0.224 0.364 0.083 0.114
IAL HCAvgSP 0.262 0.448 0.063 0.135
IAL HCCAvgPx 0.224 0.361 0.085 0.113
IAL HCCAvgSP 0.257 0.438 0.063 0.132
PNI JRC-UNet 0.239 0.386 0.081 0.123
  • Page 1 of 7
  • 25 of 162 items

Legend

CREMI score
The geometric mean of (VOI split + VOI merge) and ARAND.
VOI split and merge
The Variation of Information between a segmentation X and ground truth Y. The split and merge parts correspond to the conditional entropies H(X|Y) and H(Y|X), respectively.
ARAND
The Adapted Rand Error, i.e., 1.0 - Rand F-Score.

For each value, lower is better.

Leaderboard Synaptic Cleft Detection

Results for the synaptic cleft detection category, averaged over all samples.

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Group Submission CREMI score FP FN 1 - F-score ADGT ADF
DIVE exp18_be 136.63 8797.3 0.0 0.014 247.19 26.08
CMM Max Test 74.10 24019.3 44179.7 0.101 64.63 83.56
VCG FgUPlus8 58.66 65345.7 11887.0 0.101 70.36 46.96
HSS 3DUNet 65.34 43440.3 22443.3 0.106 63.26 67.43
DIVE exp19lst 90.80 25114.7 21554.0 0.107 117.39 64.21
VCG FgSm0808 57.34 75120.7 9109.7 0.107 72.74 41.94
DIVE ex19t5 315.97 64192.0 1757.3 0.112 600.79 31.15
HSS 3DUNet04 79.33 29732.0 27514.3 0.113 53.22 105.44
DKFZ-MIC nnUNet 74.96 49914.0 18981.3 0.117 64.46 85.46
JRC DTU-2 67.56 70761.3 10069.3 0.123 109.67 25.46
3DEM BC_BC 66.71 82113.3 13347.3 0.126 79.96 53.46
DIVE WeitUNet 78.12 54372.7 24480.3 0.128 71.51 84.73
JRC DTU-1 72.21 85169.0 13607.3 0.131 106.31 38.11
CMM UNet50 69.31 65762.0 12634.7 0.139 97.45 41.17
I2I CSparSep 75.79 71650.0 18918.3 0.140 72.06 79.52
VCG FgSm0805 54.23 111486.0 4917.0 0.142 84.04 24.43
I2I CleftB 74.31 65334.0 21669.0 0.142 92.36 56.26
3DEM ABC_BC 62.21 99221.7 10981.0 0.151 75.79 48.63
HSS HSZ 90.11 65092.3 25807.3 0.154 99.61 80.61
DIVE cleft_hi 107.24 44844.3 52063.7 0.158 94.14 120.33
I2I CleftB1 64.97 80004.7 19895.0 0.158 90.98 38.97
DIVE BouUNet 81.45 75985.0 21974.0 0.160 76.66 86.24
VCG FgUPlus 57.90 137412.7 4763.3 0.160 90.99 24.81
DIVE SegCleft 77.03 80978.3 20639.3 0.162 121.03 33.03
DIVE celft_1 77.03 80978.3 20639.3 0.162 121.03 33.03
  • Page 1 of 4
  • 25 of 98 items

Legend

CREMI score
The mean of ADGT and ADF. We are not including the F-Score for now, as our current way of computing it can lead to unfair comparison. We are working on a more robust measure and will update the results accordingly.
FP, FN, and F-Score
The False Positives, False Negatives, and the resulting F-Score in the clefts detection volume. See metrics for details.
ADGT
The average distance of any found cleft voxel to the closest ground truth cleft voxel.
ADF
The average distance of any ground truth cleft voxel to the closest found cleft voxel.

For each value, lower is better (F-Score shown as 1 - F-Score).

Leaderboard Synaptic Partner Identification

Results for the synaptic partner identification category, averaged over all samples.

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Group Submission CREMI score FP FN
AnonumoysGroup PrTrn66 0.620 238.000 451.667
DIVE PTR_V2 0.453 162.667 333.667
HCBS Tr66_80K 0.449 223.000 286.667
HCBS Tr66comb 0.451 219.000 292.333
HCBS PrnTrn66 0.465 178.667 322.333
HCBS Tr66t-01 0.469 182.667 318.667
IAL PSP_unar 0.461 266.667 281.000
IAL PSP_full 0.464 187.333 310.000
NO2 lr_balan 0.447 175.333 314.000
NO2 lr_affin 0.567 118.333 450.000
PNI asyn_mod 0.423 367.667 262.333
PNI asyn_at0 0.468 293.333 297.000
PNI asyn_at1 0.490 274.333 314.667
PNI asyn_ori 0.493 310.000 302.333
  • 14 items

Legend

CREMI score
1 - F-Score of the FP and FN.
FP, FN
The False Positives and False Negatives synaptic partner pairs. See metrics for details.

For each value, lower is better.